PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034993t1
Common NameTCM_034993
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 359aa    MW: 40624.7 Da    PI: 7.237
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034993t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.1e-1173113340
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS
            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 
                        +k +rr+++NReAAr+sR+RKka++++Le    k ++Le+
  Thecc1EG034993t1  73 TDKIQRRLAQNREAARKSRLRKKAYVQQLESsrlKLAQLEQ 113
                       7899**************************83333444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.2E-865120No hitNo description
SMARTSM003385.5E-571131IPR004827Basic-leucine zipper domain
PfamPF001709.8E-873111IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.16373117IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.47E-775116No hitNo description
PROSITE patternPS0003607893IPR004827Basic-leucine zipper domain
PfamPF141441.2E-28161236IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSSPSTELTK RMAIYEQFHQ ISRWGDVFNS DNSPNTGSST IVQVDVRLDN KAEYISCEQV  60
EPSRSDQETN KPTDKIQRRL AQNREAARKS RLRKKAYVQQ LESSRLKLAQ LEQELERARQ  120
QGIYISSASD TGYFGLSGTV NSGITAFEME YGHWVEEQNK QICELRSALQ AHITDIELRI  180
LVESGLNHYC NLFRMKADAA KADIFYLISG IWRTSAERFF HWIGGFRPSE LLNAVMSQIE  240
PLTDQQHLEV CNLRQSSQQA EDALSQGIDK LQQNLAQSVA ADLSSGNYRV QMAAAIDKLE  300
ALEGFVNQAD HLRQQTLQQM ARILTTRQAA RGLLALGEYF HRLRALSSLW AARPREPA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018900.10.0BZIP transcription factor family protein
SwissprotQ93ZE21e-172TGA7_ARATH; Transcription factor TGA7
TrEMBLA0A061FFL90.0A0A061FFL9_THECC; BZIP transcription factor family protein
STRINGPOPTR_0005s16400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-161bZIP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]